Bio-informatics

The bioinformatics platform of the Mondor Institute for Biomedical Research was created in 2017 to offer the IMRB’s research teams, and more generally the UPEC (Université Paris-Est Créteil) and the outside world :

• Access to computing facilities
  Creating an account and a workspace
  Access to the calculation means via a schematizer (slurm)
  Access to installed software and banks
  Ability to install and deploy locally dedicated pipelines and banks.

• Support with bio-informatics analyses
  Advice upstream of bio-informatics and/or bio-statistical analyses
  Support for bioinformatics analysis and reporting of results
  Training and/or assistance

• Bioinformatics expertise

• Example of pipelines/services:

– Search for variants
– Metagenomics 16S
– ChIP-seq
– RNA-seq

– scRNA-seq

– Biological systems modeling

• Equipment :

– 1 compute server composed of 7 16C nodes (32GB RAM per node + GPU) and 7 16C nodes (512GB RAM per node)
– Local storage (100To)
– 85 TB disk bay (replicated)

Resources :

The documents for agents provided by the bioinformatics platform can be found here in the data library on the platform’s homepage.

Location :
IMRB-U955
4th floor of the Créteil Faculty of Health
Gate 4053
8 rue du Général SARRAIL
94010 Créteil

Contact: bioinfo.imrb@inserm.fr