Bio-informatics platform

The bioinformatics platform of the Mondor Institute for Biomedical Research was created in 2017 to offer the IMRB’s research teams, and more generally the UPEC (Université Paris-Est Créteil) and the outside world :

• Access to computing facilities
  Creating an account and a workspace
  Access to the calculation means via a schematizer (slurm)
  Access to installed software and banks
  Ability to install and deploy locally dedicated pipelines and banks.

• Support with bio-informatics analyses
  Advice upstream of bio-informatics and/or bio-statistical analyses
  Support for bioinformatics analysis and reporting of results
  Training and/or assistance

• Bioinformatics expertise

• Example of pipelines/services:
  – search for variants
  – Genomic meta (16S/WGS)
  – ChIP-seq
  – RNA-seq
  – biological systems modeling

• Equipment :
  – 1 compute server composed of 8 16C nodes (64GB RAM per node + GPU) and 4 16C nodes (512GB RAM per node + GPU)
  – 1 compute server composed of 2 nodes of 16C and 512 GB RAM per node
  – local storage
  – 25 TB disk bay

Resources :

The documents for agents provided by the bioinformatics platform can be found here in the data library on the platform’s homepage.

Location :
IMRB-U955
2nd floor of the Créteil Faculty of Medicine
Gate 2037
8 rue du Général SARRAIL
94010 Créteil

Contact: bioinfo.imrb@inserm.fr